PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06630.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 297aa    MW: 32597.8 Da    PI: 9.1837
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06630.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92.1e-3152101150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  OMERI01G06630.4  52 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 101
                      79***********************************************8 PP

2K-box102.36.5e-341202164100
            K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      s++   ++e +a+++qqe++kL+++i++Lq+ +R ++G++++++sl++L+q+e++Lek++ kiR++Knell++++e++qk+e elq++n++Lr+
  OMERI01G06630.4 120 SNS-GtVAEVNAQHYQQESSKLRQQISSLQNANRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRS 212
                      333.25999************************************************************************************* PP

            K-box  97 klee 100
                      k++e
  OMERI01G06630.4 213 KVAE 216
                      *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.13244104IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-4244103IPR002100Transcription factor, MADS-box
CDDcd002651.87E-4545118No hitNo description
SuperFamilySSF554555.62E-3345116IPR002100Transcription factor, MADS-box
PROSITE patternPS00350046100IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-334666IPR002100Transcription factor, MADS-box
PfamPF003191.2E-2653100IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-336681IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-3381102IPR002100Transcription factor, MADS-box
PfamPF014861.3E-24129214IPR002487Transcription factor, K-box
PROSITE profilePS5129714.245130220IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMNMMTDLSC GPSSMTELTA AAAPAGSGSS SAAAAVAAGS SEKMGRGKIE IKRIENTTNR  60
QVTFCKRRNG LLKKAYELSV LCDAEVALIV FSSRGRLYEY ANNSVKSTVE RYKKANSDTS  120
NSGTVAEVNA QHYQQESSKL RQQISSLQNA NRTIVGDSIN TMSLRDLKQV ENRLEKGIAK  180
IRARKNELLY AEVEYMQKRE VELQNDNMYL RSKVAENERG QQPLNMMAAS TSEYDHMELS  240
SSEHHAAASA LHPSAAANYP STRAAAGLQL VLLKSESFLY LLQMKSEGVD TRGYVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S1e-2144112169Myocyte-specific enhancer factor 2B
1tqe_R1e-2144112169Myocyte-specific enhancer factor 2B
1tqe_Q1e-2144112169Myocyte-specific enhancer factor 2B
1tqe_P1e-2144112169Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7509400.0FJ750940.1 Oryza sativa clone KCS254F12 MADS-box transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632498.11e-151PREDICTED: MADS-box transcription factor 3 isoform X2
SwissprotQ407041e-137MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0E0BYR70.0A0A0E0BYR7_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g10504.11e-149(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.14e-99MIKC_MADS family protein